PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G151325.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 503aa    MW: 57936.5 Da    PI: 10.2143
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G151325.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1552.7e-1793170188
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                           +fYn Y+ e+GF +r+ +s+ + +n+ +t+ +fvCs+eg   +++ +         + rtgCka+++++++ d+ w+++++e eHnH 
  Sobic.010G151325.1.p  93 DFYNIYSWEIGFGIRTGRSRVN-NNKYTTRLDFVCSCEGLCPNTSAA---------SYRTGCKAMIRLHRTLDHGWVISRFEREHNHL 170
                           6*****************9988.8888************99887655.........9******************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1393170IPR004330FAR1 DNA binding domain
PfamPF105515.1E-26293385IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MELQPSFLIE SFQGNDGMSS PLIAASAANL IYRGQESNGL KRKRAKHGPD SKSSPLEESA  60
ISQAMRTASN RPLEPVFIPV VGMEFNLAKE AKDFYNIYSW EIGFGIRTGR SRVNNNKYTT  120
RLDFVCSCEG LCPNTSAASY RTGCKAMIRL HRTLDHGWVI SRFEREHNHL CSATYGQNKH  180
WPSHSDIDPM TKDFVRKLRE NNIPIGRVCS ILGVHGSDSA IPITKESVRS LCASIAQENI  240
KDDIGKTIDL LEQMKNKDLG MEIRFKLDDD GKIKSMLWCT GKNRADFAKF GDVVTFDTTY  300
RTNLYNLRFG LFIGVNNHFQ SIVFGGVLTN EKVQDFEWAF SKFSEIMFGK QLQTILTDQC  360
QAMAAAIKSI FPAANHRWCR WHVLRKTKQK VGLVYSKKSN FKKEFNKLVT EETNQNRFER  420
KWRQLMRKYY LIENQFMNRI FKHRAKWAKP YFMGIFFAGM TSTQRSESAN HMLKQFIQRS  480
APMHMFVRKF NELQMDRNES GR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442202.10.0hypothetical protein SORBIDRAFT_08g016320
TrEMBLC5YP290.0C5YP29_SORBI; Putative uncharacterized protein Sb08g016320
STRINGSb08g016320.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-55FAR1-related sequence 5